| 1 | Intro (Title Screen) | Toadofsky & Friends | 1:51 |
| 2 | "Littleroot Town" | celadonDREAM Suite | 5:16 |
| 3 | "R̵͇̀o̴͙͝u̶͙̅t̶̬̕ẹ̵̌ ̸͇̀1̶̗̃0̴̻͆4̶̜͗ (Corrupted Save Remix)" | skyweed64 | 2:05 |
| 4 | "Doom Desire" | Hallucinogenic Bulb | 4:05 |
| 5 | "Rustboro City _ カナズミシティ" | Doffu | 4:57 |
| 6 | "Advanced Generation" | Toadofsky | 2:06 |
| 7 | "Route 111 (Remix)" | GAMOR VAPOR | 2:56 |
| 8 | "Evolution" | RVCK | 2:04 |
| 9 | "Surfing" | c a l d o r 32x | 4:21 |
| 10 | "Mt. Pyre's Inner Wall" | ZEN87 | 2:10 |
| 11 | "Slateport Mews" | Toadofsky | 2:20 |
| 12 | "Destination Unown, But Certain (Route 113)" | Sloopygoop | 4:47 |
| 13 | Leader Maxie (Interlude) | Toadofsky & Friends | 0:50 |
| 14 | "Sealed Power" | Hydraヒドラ | 2:30 |
| 15 | "Tatakai戦い" | v i r t u a l _ b o y | 4:25 |
| 16 | "Breakup At The Dewford Diner" | Michael P. Salvarallo | 4:18 |
| 17 | "Wish Maker" | Toadofsky | 1:28 |
| 18 | "Petalburg City (Legendary Remix)" | Neon95 | 3:08 |
| 19 | "So Far Away" | johh_not_hrk | 3:19 |
| 20 | "Drenched (Team Aqua's Ambition)" | Shonen Sampler | 2:23 |
| 21 | "ポケモンセンターHealing Station" | FOTOshoppeツ | 6:57 |
| 22 | "Drought" | Gonemage | 1:47 |
| 23 | "Abandoned Ship" | Shy Guy 64 | 3:09 |
| 24 | "Backroom of Glory" | Toadofsky | 2:15 |
| 25 | Leader Archie (Interlude) | Toadofsky & Friends | 0:57 |
| 26 | "Crossing The Sea" | Enraile | 1:22 |
| 27 | "Mt. Pyre's Outer Wall" | Clever Tribe | 2:48 |
| 28 | "Eon Twins" | Toadofsky | 2:19 |
| 29 | "Space Virus Mutation" | Hallucinogenic Bulb | 2:11 |
| 30 | "Regi Battle Theme (Pokémon Stadium Remix)" | Skyweed64 | 2:02 |
| 31 | "Rayquaza's Descent" | Pokérus Project | 2:50 |
| 32 | "Love Is An Ocean (Dive Remix)" | 1 Star Gacha Club | 3:24 |
| 33 | "Ancient Being Battle" | Mr. Hideyoshi | 6:30 |
| 34 | "Ending" | けｍ SURF | 2:32 |