| 1 | “Introducción” from Suite Punta del Este (12 Monkeys Theme) | Paul Buckmaster | 0:52 |
| 2 | Cole’s First Dream / Volunteer Duty / Topside | Paul Buckmaster | 3:11 |
| 3 | Silent Night | Paul Buckmaster | 1:07 |
| 4 | Spider Research / “Introducción” (We Did It) / The Proposition | Paul Buckmaster | 1:58 |
| 5 | Time Confusion / To the Mental Ward / Planet Ogo | Paul Buckmaster | 1:52 |
| 6 | Wrong Number / Cole’s Second Dream / Dormitory Spider / “Introduccion” (Twin Moons Tango) | Paul Buckmaster | 3:32 |
| 7 | Vivisection | Charles Olins | 1:20 |
| 8 | Sleepwalk | BJ Cole | 2:23 |
| 9 | “Introducción” (Escape to Nowhere) / Scanner Room / Capture and Sedation | Paul Buckmaster | 3:32 |
| 10 | Cole’s Third Dream | Paul Buckmaster | 0:20 |
| 11 | Interrogation / Time Capsule / Cole Kidnaps Railly | Paul Buckmaster | 4:55 |
| 12 | Blueberry Hill | Fats Domino | 2:19 |
| 13 | What a Wonderful World | Louis Armstrong | 2:18 |
| 14 | Cole’s Fourth Dream | Paul Buckmaster | 0:26 |
| 15 | Comanche | Link Wray & His Raymen | 2:03 |
| 16 | Earth Died Screaming | Tom Waits | 3:35 |
| 17 | “Introducción” (Quest for Twelve Monkeys) | Paul Buckmaster | 4:33 |
| 18 | Fateful Bullet / A Boot from the Trunk / Cole’s Longing | Paul Buckmaster | 3:04 |
| 19 | Photo Search / Mission Brief | Paul Buckmaster | 1:27 |
| 20 | Back in ’96 | Paul Buckmaster | 2:06 |
| 21 | Fugitives / Fateful Love / Home Dentistry | Paul Buckmaster | 3:22 |
| 22 | “Introducción” (12 Monkeys Theme Reprise) / Giraffes & Flamingos | Paul Buckmaster | 1:03 |
| 23 | This Is My Dream / Cole’s Call / Louis & Jose | Paul Buckmaster | 3:13 |
| 24 | Peters Does His Worst | Paul Buckmaster | 3:51 |
| 25 | Dreamers Awake | Paul Buckmaster | 3:35 |