| 1 | NEO | Sota Fujimori feat. Paula Terry | 4:00 |
| 2 | Main Title | Sota Fujimori | 1:30 |
| 3 | Trush Head [Options] | Sota Fujimori | 1:28 |
| 4 | Tutorial | Sota Fujimori | 0:33 |
| 5 | Mission [Mission Select] | Sota Fujimori | 2:16 |
| 6 | Safety First [Mission 01 A] | Sota Fujimori | 6:20 |
| 7 | Gegebonne [Mission 01 B] | Sota Fujimori | 3:31 |
| 8 | Dictator [Guerilla CONTRA Cutscene] | Sota Fujimori | 1:11 |
| 9 | Electro Mechanism [vs Guerilla CONTRA] | Sota Fujimori | 4:30 |
| 10 | Ranking [Results Screen] | Sota Fujimori | 0:37 |
| 11 | Battle Train Remix [Mission 02 A] | Sota Fujimori | 6:06 |
| 12 | Nuclear [Mission 02 B] | Sota Fujimori | 3:55 |
| 13 | Mystery G [Plant CONTRA Cutscene] | Sota Fujimori | 1:15 |
| 14 | Photosynthesis [vs Plant CONTRA A] | Sota Fujimori | 5:09 |
| 15 | Plant Flash [vs Plant CONTRA B] | Sota Fujimori | 4:12 |
| 16 | Nu Metal [Mission 03] | Sota Fujimori | 5:17 |
| 17 | Acid NRG [vs Pheromone Mecha] | Sota Fujimori | 5:17 |
| 18 | Bad Girl [Pheromone CONTRA Cutscene] | Sota Fujimori | 2:06 |
| 19 | Drum 'n' Boss [vs Pheromone CONTRA] | Sota Fujimori | 4:42 |
| 20 | Lucia [Lucia Cutscene] | Sota Fujimori | 1:30 |
| 21 | Chopper [Mission 04 A] | Sota Fujimori | 4:41 |
| 22 | Airship [Mission 04 B] | Sota Fujimori | 2:53 |
| 23 | Animal CONTRA [Animal CONTRA Cutscene] | Sota Fujimori | 1:08 |
| 24 | Violator [vs Animal CONTRA] | Sota Fujimori | 4:36 |
| 25 | Heaven's Beat [Mission 05] | Sota Fujimori | 5:38 |
| 26 | Kimkoh [Mission 05 B] | Sota Fujimori | 5:08 |
| 27 | Alien's Den [Mission 05 C] | Sota Fujimori | 6:07 |
| 28 | Tennou Ki Gyaba [vs Gava] | Sota Fujimori | 3:53 |
| 29 | Master CONTRA [Master CONTRA Cutscene A] | Sota Fujimori | 1:38 |
| 30 | Launch [Mission 06] | Sota Fujimori | 6:36 |
| 31 | Master of the Universe [Master CONTRA Cutscene B] | Sota Fujimori | 1:37 |
| 32 | Supreme Commander [vs Master CONTRA A] | Sota Fujimori | 6:13 |
| 33 | Metamorphosis [Master CONTRA Cutscene C] | Sota Fujimori | 5:59 |
| 34 | Lockjaw [vs Master CONTRA B] | Sota Fujimori | 2:09 |
| 35 | 101 | Sota Fujimori | 0:50 |
| 36 | A TRUE LAST BOSS [from 'SHIN CONTRA'] | Sota Fujimori | 5:50 |
| 37 | Mission Clear | Sota Fujimori | 0:04 |
| 38 | Whale [Good End FMV] | Sota Fujimori | 0:46 |
| 39 | Staff Roll | Sota Fujimori | 4:52 |
| 40 | You are CONTRA [Mission Complete] | Sota Fujimori | 0:05 |
| 41 | Continue | Sota Fujimori | 0:07 |
| 42 | Game Over | Sota Fujimori | 0:04 |
| 43 | Battle Train (HOT SOTA MIX) | Akira Yamaoka | 5:11 |
| 44 | NEO (Extra Bold Mix) | Shoichiro Hirata feat. Paula Terry | 4:35 |
| 45 | Midnight Blaze (SySF Mix) | Sota Fujimori | 6:16 |
| 46 | Winning Eleven9 Theme (IIDX EDITION) | Sota Fujimori | 2:04 |
| 47 | PARANOiA -Respect- | Sota Fujimori | 1:41 |