| 1 | Title | 松岡大祐 | 5:06 |
| 2 | Prologue ~ Theme of SUPER METROID | 松岡大祐 | 2:01 |
| 3 | Menu ~ In the Cockpit | 松岡大祐 | 2:04 |
| 4 | Ship Landing | 松岡大祐 | 0:51 |
| 5 | Samus Appearance Jingle | 松岡大祐 | 0:07 |
| 6 | Surface, Sector 1 ~ Surface of SR388 (Ambient) | 松岡大祐 | 3:16 |
| 7 | Item Room / Elevator | 松岡大祐 | 1:15 |
| 8 | Item Obtainment Jingle | 松岡大祐 | 0:07 |
| 9 | Chozo Seal Room ~ Ancient Chozo Ruins (Ver. 1) | 松岡大祐 | 3:01 |
| 10 | Aeion Ability Obtainment Jingle | 松岡大祐 | 0:08 |
| 11 | Surface, Sector 2 ~ Surface of SR388 | 松岡大祐 | 3:06 |
| 12 | Expansion Obtainment Jingle | 松岡大祐 | 0:05 |
| 13 | Before the Boss Battle | 松岡大祐 | 1:00 |
| 14 | VS. Alpha Metroid | 松岡大祐 | 1:58 |
| 15 | Boss Defeated | 松岡大祐 | 1:52 |
| 16 | Puzzle Solved Jingle | 松岡大祐 | 0:03 |
| 17 | Chozo Seal Unlocked Jingle | 松岡大祐 | 0:09 |
| 18 | Unlocked Chozo Seal Room | 松岡大祐 | 6:52 |
| 19 | Area 1 ~ Caverns (Ver. 2) | 松岡大祐 | 6:16 |
| 20 | Extreme Heat ~ Norfair - Ancient Ruins Area | 松岡大祐 | 4:31 |
| 21 | Area 2, Sector 1 | 松岡大祐 | 5:28 |
| 22 | VS. Evolved Alpha Metroid | 松岡大祐 | 1:49 |
| 23 | Area 2, Sector 2 | 松岡大祐 | 3:52 |
| 24 | Area 2, Sector 3 | 松岡大祐 | 4:19 |
| 25 | VS. Gamma Metroid | 松岡大祐 | 2:21 |
| 26 | VS. Arachnus | 松岡大祐 | 1:54 |
| 27 | Area 3, Sector 1 ~ Caverns (Ver. 2) | 松岡大祐 | 6:22 |
| 28 | Area 3, Sector 2 ~ Ancient 39. Chozo Ruins (Ver. 2) | 松岡大祐 | 5:34 |
| 29 | Area 3, Sector 3 ~ Caverns (Ver. 3) | 松岡大祐 | 2:39 |
| 30 | Area 4 | 松岡大祐 | 2:37 |
| 31 | Damaged Item Room | 松岡大祐 | 1:54 |
| 32 | Diggernaut Chase | 松岡大祐 | 1:44 |
| 33 | VS. Zeta Metroid | 松岡大祐 | 3:03 |
| 34 | Area 5, Sector 1 | 松岡大祐 | 4:04 |
| 35 | Area 5, Sector 2 ~ Brinstar (Red Soil Wetland Area) | 松岡大祐 | 6:00 |
| 36 | Area 5, Sector 3 ~ Ancient Chozo Ruins (Ver. 3) | 松岡大祐 | 3:28 |
| 37 | Area 6, Sector 1 | 松岡大祐 | 2:18 |
| 38 | Area 6, Sector 2 | 松岡大祐 | 2:16 |
| 39 | Damaged Chozo Seal Room | 松岡大祐 | 2:39 |
| 40 | VS. Omega Metroid | 松岡大祐 | 3:08 |
| 41 | VS. Diggernaut | 松岡大祐 | 4:58 |
| 42 | Area 7 | 松岡大祐 | 3:47 |
| 43 | Area 8, Sector 1 | 松岡大祐 | 3:30 |
| 44 | Area 8, Sector 2 ~ Metroid Nest | 松岡大祐 | 5:37 |
| 45 | Area 8, Sector 3 | 松岡大祐 | 2:39 |
| 46 | VS. Queen Metroid | 松岡大祐 | 4:04 |
| 47 | Area 8, Sector 4 ~ Metroid Hatchling Theme | 松岡大祐 | 3:46 |
| 48 | Surface, Sector 3 ~ Planet Zebes - Crateria Arrival | 松岡大祐 | 3:15 |
| 49 | VS. Proteus Ridley, Phase 1 | 松岡大祐 | 2:34 |
| 50 | VS. Proteus Ridley, Phase 2 | 松岡大祐 | 2:31 |
| 51 | VS. Proteus Ridley, Phase 3 | 松岡大祐 | 3:28 |
| 52 | Ending | 松岡大祐 | 0:52 |
| 53 | Staff Credits | 松岡大祐 | 3:50 |
| 54 | End Results | 松岡大祐 | 2:53 |
| 55 | Chozo Memories ~ Chozo Memory #11 | 松岡大祐 | 0:42 |