| 1 | The Trashmen / The Agency | James Horner | 0:46 |
| 2 | Main Title | James Horner | 3:45 |
| 3 | The Helicopter Arrives | James Horner | 0:55 |
| 4 | Run to the Shed and Chase | James Horner | 2:38 |
| 5 | Matrix Captured / Jenny Tied Up | James Horner | 1:50 |
| 6 | Into the Plane | James Horner | 0:53 |
| 7 | Don’t Disturb My Friend | James Horner | 3:36 |
| 8 | Matrix Hits the Swamp | James Horner | 1:14 |
| 9 | Matrix Walks in the Terminal | James Horner | 0:27 |
| 10 | Matrix on the Move | James Horner | 0:48 |
| 11 | Don’t Move | James Horner | 6:30 |
| 12 | Sully Starts to Run | James Horner | 4:33 |
| 13 | Drive Away From Pier | James Horner | 3:41 |
| 14 | Matrix Breaks Lock | James Horner | 2:13 |
| 15 | Matrix Jumps to Floor | James Horner | 1:40 |
| 16 | Cut to Val Verde | James Horner | 1:23 |
| 17 | Matrix Climbs Up Bank | James Horner | 3:15 |
| 18 | Soldier Gets Pitchfork / Matrix Runs Up Steps | James Horner | 3:47 |
| 19 | Arius Crashes Through Window | James Horner | 3:20 |
| 20 | Matrix Approaches General | James Horner | 0:56 |
| 21 | Someday, Somehow, Someone’s Gotta Pay | The Power Station | 4:36 |
| 22 | Soldier Gets Pitchfork (alternate) | James Horner | 1:29 |
| 23 | Don’t Disturb My Friend (alternate) | James Horner | 3:21 |
| 24 | Don’t Disturb My Friend (alternate mix) | James Horner | 3:56 |