| 1 | Main Title (electric violin version) | Alexander Courage & Gene Roddenberry | 0:54 |
| 2 | Small Planet Visit / The Changeling (The Man Trap) | Alexander Courage | 3:29 |
| 3 | Episode Titles / Genuine Affection (The Man Trap) | Alexander Courage | 1:01 |
| 4 | First Goner / Salty Cat / Dressing Down (The Man Trap) | Alexander Courage | 1:54 |
| 5 | Circle One / Monitor Gizzard / Down Again / Grey to Greene (The Man Trap) | Alexander Courage | 3:18 |
| 6 | Salt Chaser (The Man Trap) | Alexander Courage | 1:35 |
| 7 | Noisy Plant (The Man Trap) | Alexander Courage | 1:07 |
| 8 | At First Sight / Pill Tosser (The Man Trap) | Alexander Courage | 2:54 |
| 9 | Nancy Schmancy (The Man Trap) | Alexander Courage | 1:55 |
| 10 | The Unreal McCoy (The Man Trap) | Alexander Courage | 2:03 |
| 11 | Top Security / Lazer Dazer / Dodo Girl (The Man Trap) | Alexander Courage | 4:04 |
| 12 | Conference (The Man Trap) | Alexander Courage | 4:50 |
| 13 | Dead Crater / Last of the Last (The Man Trap) | Alexander Courage | 4:15 |
| 14 | Warp One (The Man Trap) | Alexander Courage | 0:48 |
| 15 | Trailer (The Man Trap) | Alexander Courage | 1:09 |
| 16 | Brass Monkeys / Out of Glove (The Naked Time) | Alexander Courage | 3:00 |
| 17 | Breaking Planet / Sweaty Palm / Itchy Hand (The Naked Time) | Alexander Courage | 1:23 |
| 18 | Joe Berserk (The Naked Time) | Alexander Courage | 3:04 |
| 19 | Pulled Down / It Spreads (The Naked Time) | Alexander Courage | 1:14 |
| 20 | Joe Goes / Sulu Finks out (The Naked Time) | Alexander Courage | 1:02 |
| 21 | Up the Rebels / D'artagnan-San (The Naked Time) | Alexander Courage | 3:10 |
| 22 | Banana Farm (The Naked Time) | Alexander Courage | 2:13 |
| 23 | Out of Control / Lurch Time / Punchy Kid (The Naked Time) | Alexander Courage | 1:50 |
| 24 | Party Time (The Naked Time) | Alexander Courage | 1:36 |
| 25 | Medicine Girl / Hot Skin (The Naked Time) | Alexander Courage | 4:31 |
| 26 | Off the Cloud (The Naked Time) | Alexander Courage | 1:08 |
| 27 | Captain's Wig (The Naked Time) | Alexander Courage | 4:02 |
| 28 | The Big Go (The Naked Time) | Alexander Courage | 2:44 |
| 29 | Time Reverse / Future Risk and End Title (The Naked Time) | Alexander Courage | 1:49 |
| 30 | Trailer (Mudd's Women) | Alexander Courage | 1:06 |
| 31 | End Title (Electric Violin Version) | Alexander Courage & Gene Roddenberry | 0:46 |