| 1 | Somewhat Damaged (definitive edition + Deviations 1) | Nine Inch Nails | 5:20 |
| 2 | The Day the World Went Away (definitive edition) | Nine Inch Nails | 5:04 |
| 3 | The Frail (definitive edition) | Nine Inch Nails | 1:54 |
| 4 | The Wretched (definitive edition) | Nine Inch Nails | 5:35 |
| 5 | Missing Places (Deviations 1 + definitive edition) | Nine Inch Nails | 1:44 |
| 6 | We’re in This Together (definitive edition) | Nine Inch Nails | 7:01 |
| 7 | The Fragile (definitive edition) | Nine Inch Nails | 4:31 |
| 8 | Just Like You Imagined (definitive edition) | Nine Inch Nails | 3:50 |
| 8 | The March (Deviations 1) | Nine Inch Nails | 3:41 |
| 10 | Even Deeper (definitive edition) | Nine Inch Nails | 6:17 |
| 11 | Pilgrimage (CD) | Nine Inch Nails | 3:31 |
| 12 | One Way to Get There (Deviations 1) | Nine Inch Nails | 2:43 |
| 13 | Taken (Deviations 1) | Nine Inch Nails | 3:35 |
| 14 | Feeders (Deviations 1) | Nine Inch Nails | 1:51 |
| 15 | No, You Don’t (definitive edition) | Nine Inch Nails | 3:19 |
| 16 | La Mer (definitive edition) | Nine Inch Nails | 5:10 |
| 17 | The Great Below (definitive edition) | Nine Inch Nails | 5:16 |
| 18 | The Way Out Is Through (definitive edition) | Nine Inch Nails | 4:16 |
| 19 | Into the Void (definitive edition) | Nine Inch Nails | 4:49 |
| 20 | Where Is Everybody? (definitive edition) | Nine Inch Nails | 5:39 |
| 21 | The Mark Has Been Made (definitive edition) | Nine Inch Nails | 4:46 |
| 22 | 10 Miles High (definitive edition) | Nine Inch Nails | 5:04 |
| 23 | Not What It Seems Like (Deviations 1) | Nine Inch Nails | 3:29 |
| 24 | White Mask (Deviations 1) | Nine Inch Nails | 3:21 |
| 25 | Was It Worth It? (Deviations 1) | Nine Inch Nails | 5:02 |
| 26 | Please (definitive edition) | Nine Inch Nails | 3:28 |
| 27 | +Appendage (cassette) | Nine Inch Nails | 2:44 |
| 28 | Can I Stay Here? (Deviations 1) | Nine Inch Nails | 4:20 |
| 29 | The Great Collapse (Things Falling Apart) | Nine Inch Nails | 4:41 |
| 30 | Starfuckers, Inc. (definitive edition) | Nine Inch Nails | 4:59 |
| 31 | Complication (definitive edition) | Nine Inch Nails | 2:26 |
| 32 | The New Flesh (definitive edition) | Nine Inch Nails | 3:39 |
| 33 | Untitled (Web) | Nine Inch Nails | 0:59 |
| 34 | Claustrophobia Machine (Deviations 1) | Nine Inch Nails | 2:37 |
| 35 | Last Heard From (Deviations 1) | Nine Inch Nails | 2:01 |
| 36 | I’m Looking Forward to Joining You, Finally (definitive edition) | Nine Inch Nails | 4:14 |
| 37 | The Big Come Down (definitive edition) | Nine Inch Nails | 4:12 |
| 38 | Underneath It All (definitive edition) | Nine Inch Nails | 2:46 |
| 39 | Ripe (With Decay) (CD) | Nine Inch Nails | 6:36 |