| 1 | The Rock Slide / Beam Up / The Evil Kirk (The Enemy Within) | Sol Kaplan | 1:13 |
| 2 | Alter Ego (The Enemy Within) | Sol Kaplan | 1:02 |
| 3 | The Tired Captain (The Enemy Within) | Sol Kaplan | 0:44 |
| 4 | Brandy (The Enemy Within) | Sol Kaplan | 0:50 |
| 5 | The Lascivious Captain (The Enemy Within) | Sol Kaplan | 2:39 |
| 6 | Bruised Knuckles / An Impostor (The Enemy Within) | Sol Kaplan | 1:35 |
| 7 | Kirk’s Log / Indecisive / Evil Fury (The Enemy Within) | Sol Kaplan | 2:49 |
| 8 | Confrontation (The Enemy Within) | Sol Kaplan | 2:18 |
| 9 | The Prone Body / Shivering Sulu / No Repair (The Enemy Within) | Sol Kaplan | 0:38 |
| 10 | What to Do? (The Enemy Within) | Sol Kaplan | 0:44 |
| 11 | Another Brandy / The Evil Grin / Double Dog Death (The Enemy Within) | Sol Kaplan | 1:26 |
| 12 | Spock Takes Over / Help Me (The Enemy Within) | Sol Kaplan | 2:06 |
| 13 | Evil Triumphs (The Enemy Within) | Sol Kaplan | 1:08 |
| 14 | Two into One (The Enemy Within) | Sol Kaplan | 2:20 |
| 15 | One Captain Kirk / Thank You, Yeoman (The Enemy Within) | Sol Kaplan | 1:25 |
| 16 | Dagger Sweet’ner / Go for Baroque / Play-off #1 (The Conscience of the King) | Joseph Mullendore | 1:27 |
| 17 | Spaceship Titles / Dr. Leighton’s Face / Bridge #1 (The Conscience of the King) | Joseph Mullendore | 1:13 |
| 18 | Quasi-Sex (Theme from Star Trek, Jazz Version) [The Conscience of the King] | Joseph Mullendore, Alexander Courage & Gene Roddenberry | 1:40 |
| 19 | Lenore (The Conscience of the King) | Joseph Mullendore | 1:48 |
| 20 | Kirk and Lenore / He’s Dead (The Conscience of the King) | Joseph Mullendore | 1:44 |
| 21 | Spaceship / 5 Sex and a 1⁄2 / Play-off #2 (The Conscience of the King) | Joseph Mullendore | 1:12 |
| 22 | Spaceship Play-On / Toast and Corridor / Lenore’s Kiss / Short Bridge (The Conscience of the King) | Joseph Mullendore | 2:33 |
| 23 | Beyond Antares (The Conscience of the King) [feat. Nichelle Nichols] | Wilbur Hatch | 2:37 |
| 24 | Poison (The Conscience of the King) | Joseph Mullendore | 0:39 |
| 25 | Play-on #2 / Quick Ship / Phaser Overload (The Conscience of the King) | Joseph Mullendore | 1:41 |
| 26 | Kodos? / Voice Test (The Conscience of the King) | Joseph Mullendore | 1:35 |
| 27 | Everything Is Later / Play-off #3 (The Conscience of the King) | Joseph Mullendore | 1:53 |
| 28 | Ship Play-On / Woodwind Fanfare / Riley Gone (The Conscience of the King) | Joseph Mullendore | 1:11 |
| 29 | Go for Baroque (The Conscience of the King) | Joseph Mullendore | 1:26 |
| 30 | I Know That Voice / All Ghosts Dead (The Conscience of the King) | Joseph Mullendore | 3:03 |
| 31 | Opheliamania / Bridge #2 / Last Cue (The Conscience of the King) | Joseph Mullendore | 3:08 |
| 32 | New Planet / Rabbit Music (Shore Leave) | Gerald Fried | 2:22 |
| 33 | School Chum / Finnegan (Shore Leave) | Gerald Fried | 1:42 |
| 34 | 2nd Ruth (Ruth) [Shore Leave] | Gerald Fried | 2:39 |
| 35 | Old English / Tiger / Costume / Birds / Samurai (Shore Leave) | Gerald Fried | 3:51 |
| 36 | Knight / Joust (Shore Leave) | Gerald Fried | 1:29 |
| 37 | Dummy / Like Real (Shore Leave) | Gerald Fried | 0:58 |
| 38 | A Clue / Finnegan’s Return / The Leg Trick / Dirt Trick (Shore Leave) | Gerald Fried | 4:36 |
| 39 | Tiger Thoughts / Strafing / 2nd Samurai / Caretaker / Lazarus (Shore Leave) | Gerald Fried | 2:04 |
| 40 | 2nd Ruth / Ruth to Commercial (2nd Ruth) [Shore Leave] | Gerald Fried | 0:49 |